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#40 Plasmid classification and binning with Sergio Arredondo-Alonso and Anita Schürch
Manage episode 249208381 series 1537951
Does a given bacterial gene live on a plasmid or the chromosome? What other genes live on the same plasmid?
In this episode, we hear from Sergio Arredondo-Alonso and Anita Schürch, whose projects mlplasmids and gplas answer these types of questions.
Links:
- mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species (Sergio Arredondo-Alonso, Malbert R. C. Rogers, Johanna C. Braat, Tess D. Verschuuren, Janetta Top, Jukka Corander, Rob J. L. Willems, Anita C. Schürch)
- gplas: a comprehensive tool for plasmid analysis using short-read graphs (Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch)
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episoder
Manage episode 249208381 series 1537951
Does a given bacterial gene live on a plasmid or the chromosome? What other genes live on the same plasmid?
In this episode, we hear from Sergio Arredondo-Alonso and Anita Schürch, whose projects mlplasmids and gplas answer these types of questions.
Links:
- mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species (Sergio Arredondo-Alonso, Malbert R. C. Rogers, Johanna C. Braat, Tess D. Verschuuren, Janetta Top, Jukka Corander, Rob J. L. Willems, Anita C. Schürch)
- gplas: a comprehensive tool for plasmid analysis using short-read graphs (Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch)
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episoder
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